Package index • dmcognigen

Calculations

Apply standard equations.

calculate_astcat(): Calculate Aspartate Aminotransferase Category

calculate_bmi(): Calculate Body Mass Index

calculate_bsa(): Calculate Body Surface Area

calculate_crcl(): Calculate Creatinine Clearance

calculate_crcl_peck(): Calculate Creatinine Clearance using the Peck Formula

calculate_egfr(): Calculate Estimated Glomerular Filtration Rate (eGFR)

calculate_egfr_child(): Calculate Estimated Glomerular Filtration Rate for Children using the Schwartz Formula

calculate_ibw(): Calculate Ideal Body Weight

calculate_ibw_child(): Calculate Ideal Body Weight for Children

calculate_lbm(): Calculate Lean Body Mass

calculate_nciliv(): Calculate NCI Liver Function Group

calculate_rfcat(): Calculate Renal Function Category

calculate_tbilcat(): Calculate Total Bilirubin Category

Data requirements

Import and leverage data requirements.

read_requirements() as_requirements() available_requirements_table(): Get available and latest data requirements files

join_decode_labels() join_decode_levels() decode_tbls_lvl_to_lbl(): Join decode labels or levels

set_labels() `set_labels<-`(): Set variable labels

Data review and manipulation

cnt(): Count observations and unique values by group

set_labels() `set_labels<-`(): Set variable labels

distinct_stationary_variables() stationary_variables(): Subset to stationary content (one row per group)

Decode tables

Extract and join information from decodes.

as_decode_tbl() as_decode_tbls(): Build decode tables

extract_decode_tbl() extract_decode_tbls(): Extract decode tables

extract_decode_tbls_from_data(): Extract decode tables from data

join_decode_labels() join_decode_levels() decode_tbls_lvl_to_lbl(): Join decode labels or levels

print(<decode_tbl>) print(<decode_tbls>): Print values of decode tables

set_decode_factors(): Create factor variables based on decodes

Import data

read_docx_tables(): Read tables from a Word file (docx)

Search environment data

Search for patterns in variable names, labels, and content.

cnt_search_result(): Count search results

print(<search_result>): Print search results

search_environment_data(): Search data in an environment for a pattern

in_which(): Find objects containing names

Built in datasets

Example datasets and data requirements generated from pharmaversesdtm datasets.

dmcognigen_conc: PK Concentrations Dataset

dmcognigen_cov: Covariate Dataset

dmcognigen_dose: Dose Dataset

dmcognigen_pk: PK Dataset

dmcognigen_pk_requirements: Example PK Data Requirements